miRBase entry: abu-mir-1-1

Stem-loop abu-mir-1-1

Accession

MI0033819

Description

Astatotilapia burtoni abu-mir-1-1 precursor miRNA

Sequence

acauacuucuuuauguacccauaugaacauaugauagcuaUGGAAUGUAAAGAAGUAUGUAU
((((((((((((((((..(((((...............))))).))))))))))))))))..

Structure

--                ac     ugaaca 
  acauacuucuuuaugu  ccaua      u
  ||||||||||||||||  |||||      a
  UGUAUGAAGAAAUGUA  GGUau      u
UA                -A     cgauag

Annotation confidence Not enough data

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Genome context

JH425323.1: 1961334-1961395 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-1-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-1

Accession	MIMAT0042115
Description	Astatotilapia burtoni abu-miR-1 mature miRNA
Sequence	41 - UGGAAUGUAAAGAAGUAUGUAU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381