miRBase entry: abu-mir-19d

Stem-loop abu-mir-19d


Accession
MI0033827
Description
Astatotilapia burtoni abu-mir-19d precursor miRNA


Sequence

agcuuugcagggugggcagucagccugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure
-  c      -    gg   gu    c  u  g a 
 ag uuugca gggu  gca  cagc ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 


Annotation confidence Not enough data
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Genome context
JH425502.1: 77538-77603 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from abu-mir-19d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-19d

Accession MIMAT0042119
Description Astatotilapia burtoni abu-miR-19d mature miRNA
Sequence 45 - UGUGCAAACCCAUGCAAAACUG - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381