miRBase entry: abu-mir-23a-2

Stem-loop abu-mir-23a-2


Accession
MI0033832
Description
Astatotilapia burtoni abu-mir-23a-2 precursor miRNA


Sequence

ggguuccuggcaccgugauuugaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCCA
((((((((((((..(((((((...................)))))))..))))))))))..)).

Structure
-  --          cc       gaugcaca 
 gg  guuccuggca  gugauuu        a
 ||  ||||||||||  |||||||        a
 CC  UAGGGACCGU  CACUAaa        g
A  UU          UA       aacaaaga 


Annotation confidence Not enough data
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Genome context
JH425446.1: 538593-538656 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-23a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-23a

Accession MIMAT0042122
Description Astatotilapia burtoni abu-miR-23a mature miRNA
Sequence 43 - AUCACAUUGCCAGGGAUUUCCA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381