miRBase entry: abu-mir-130-1

Stem-loop abu-mir-130-1


Accession
MI0033833
Description
Astatotilapia burtoni abu-mir-130-1 precursor miRNA


Sequence

gcccuuuuucuguugcacuacuggacacugagaugagCAGUGCAAUAUUAAAAGGGCA
((((((((..(((((((((.((.............)).)))))))))..)))))))).

Structure
-        uc         a  ggaca 
 gcccuuuu  uguugcacu cu     c
 ||||||||  ||||||||| ||     u
 CGGGAAAA  AUAACGUGA ga     g
A        UU         C  guaga 


Annotation confidence Not enough data
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Genome context
JH425495.1: 27044-27101 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-130-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-130

Accession MIMAT0042123
Description Astatotilapia burtoni abu-miR-130 mature miRNA
Sequence 38 - CAGUGCAAUAUUAAAAGGGCA - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381