miRBase entry: abu-mir-20a

Stem-loop abu-mir-20a

Accession

MI0033839

Description

Astatotilapia burtoni abu-mir-20a precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGucuucuuacuguuuaaauucuacugcaaugugagcacuucaagu
..(((((((((((.(((((.(((...................)))))))).))))))))))).....

Structure

---UA           G     G   ucuucuua 
     AAGUGCUUAUA UGCAG UAG        c
     ||||||||||| ||||| |||        u
     uucacgagugu acguc auc        g
ugaac           a     -   uuaaauuu

Annotation confidence Not enough data

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Genome context

JH425363.1: 1164804-1164870 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from abu-mir-20a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-20a

Accession	MIMAT0042128
Description	Astatotilapia burtoni abu-miR-20a mature miRNA
Sequence	1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381