miRBase entry: abu-mir-138-1

Stem-loop abu-mir-138-1


Accession
MI0033844
Description
Astatotilapia burtoni abu-mir-138-1 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCCGaugacacacaccucuuauaacccggcuauuucacaacaccagggu
..(((((((((((((...(((((......................)))))..)))))))))))))...

Structure
-AG             UCA     augacacaca 
   CUGGUGUUGUGAA   GGCCG          c
   |||||||||||||   |||||           
   gaccacaacacuu   ucggc          c
ugg             -ua     ccaauauucu 


Annotation confidence Not enough data
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Genome context
JH425513.1: 991504-991571 [-]

Database links

Mature abu-miR-138

Accession MIMAT0042133
Description Astatotilapia burtoni abu-miR-138 mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381