miRBase entry: abu-mir-138-2

Stem-loop abu-mir-138-2


Accession
MI0033845
Description
Astatotilapia burtoni abu-mir-138-2 precursor miRNA


Sequence

AGCUGGUGUUGUGAAUCAGGCCGcugaagugucacgcacggcuuuuucacaacaccagggu
..(((((((((((((..((((((((((....))).))..))))).)))))))))))))...

Structure
-AG             UC     --  -   a 
   CUGGUGUUGUGAA  AGGCC  Gc uga g
   |||||||||||||  |||||  || |||  
   gaccacaacacuu  uucgg  cg acu u
ugg             -u     ca  c   g 


Annotation confidence Not enough data
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Genome context
JH426279.1: 37844-37904 [-]

Database links

Mature abu-miR-138

Accession MIMAT0042133
Description Astatotilapia burtoni abu-miR-138 mature miRNA
Sequence 1 - AGCUGGUGUUGUGAAUCAGGCCG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381