miRBase entry: abu-mir-18a

Stem-loop abu-mir-18a

Accession

MI0033850

Description

Astatotilapia burtoni abu-mir-18a precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuacugcccuaagugcuccuucu
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))..

Structure

-U    U    C   U    A   -  aagu 
  AAGG GCAU UAG GCAG UAg ug    a
  |||| |||| ||| |||| ||| ||    g
  uucc cgug auc cguc auc ac    a
uc    u    a   c    -   c  gauc

Annotation confidence Not enough data

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Genome context

JH425363.1: 1164442-1164503 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from abu-mir-18a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-18a

Accession	MIMAT0042137
Description	Astatotilapia burtoni abu-miR-18a mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGCAGAUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381