miRBase entry: abu-mir-132-1

Stem-loop abu-mir-132-1


Accession
MI0033856
Description
Astatotilapia burtoni abu-mir-132-1 precursor miRNA


Sequence

accguggcauuagauuguuacuguaguaacagcaccaguggUAACAGUCUACAGCCAUGGUC
((((((((..((((((((((((((.((....))))....))))))))))))..)))))))).

Structure
-        au            ----  a  a 
 accguggc  uagauuguuacu    gu gu a
 ||||||||  ||||||||||||    || ||  
 UGGUACCG  AUCUGACAAUgg    ca cg c
C        AC            ugac  -  a 


Annotation confidence Not enough data
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Genome context
JH425460.1: 504781-504842 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-132-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-132-3p

Accession MIMAT0042142
Description Astatotilapia burtoni abu-miR-132-3p mature miRNA
Sequence 42 - UAACAGUCUACAGCCAUGGUC - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381