miRBase entry: abu-mir-106

Stem-loop abu-mir-106

Accession

MI0033858

Description

Astatotilapia burtoni abu-mir-106 precursor miRNA

Sequence

UAAAGUGCUUACAGUGCAGGUAGugaugauaaucuggccuacugcauugugagcacuucuuu
..(((((((((((((((((...(((((....)))..))...)))))))))))))))))....

Structure

--UA                 GUA  --   g 
    AAGUGCUUACAGUGCAG   Gu  gau a
    |||||||||||||||||   ||  |||  
    uucacgaguguuacguc   cg  cua u
uuuc                 auc  gu   a

Annotation confidence Not enough data

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Genome context

JH425502.1: 77105-77166 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-106

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-106

Accession	MIMAT0042143
Description	Astatotilapia burtoni abu-miR-106 mature miRNA
Sequence	1 - UAAAGUGCUUACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381