miRBase entry: abu-mir-24a-4

Stem-loop abu-mir-24a-4

Accession

MI0033866

Description

Astatotilapia burtoni abu-mir-24a-4 precursor miRNA

Sequence

ugccuacugagcugauaacaguuagauguuaacaagcacUGGCUCAGUUCAGCAGGAAC
..(((.(((((((((.....(((((.((((....)))))))))))))))))).)))...

Structure

-ug   a         uaaca     a    a 
   ccu cugagcuga     guuag uguu a
   ||| |||||||||     ||||| ||||  
   GGA GACUUGACU     CGGUc acga c
CAA   C         -----     -    a

Annotation confidence Not enough data

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Genome context

JH425323.1: 1542025-1542083 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-24a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-24a

Accession	MIMAT0042140
Description	Astatotilapia burtoni abu-miR-24a mature miRNA
Sequence	40 - UGGCUCAGUUCAGCAGGAAC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381