miRBase entry: abu-mir-20b

Stem-loop abu-mir-20b


Accession
MI0033869
Description
Astatotilapia burtoni abu-mir-20b precursor miRNA


Sequence

CAAAGUGCUCACAGUGCAGGUAguaaacguucaucuacugcaguuugugcacuuggggu
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure
---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     uucacg gu u acguc auc    u
ugggg      u  u g     -   uacu 


Annotation confidence Not enough data
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Genome context
JH425336.1: 3372127-3372185 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-20b

Accession MIMAT0042153
Description Astatotilapia burtoni abu-miR-20b mature miRNA
Sequence 1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381