miRBase entry: abu-mir-193

Stem-loop abu-mir-193

Accession

MI0033876

Description

Astatotilapia burtoni abu-mir-193 precursor miRNA

Sequence

UGGGUCUUUGCGGGCAAGGUGAguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure

--    U     C    A  G     ccu 
  UGGG CUUUG GGGC AG UGAgu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu

Annotation confidence Not enough data

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Genome context

JH425525.1: 562785-562843 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-193

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-193-5p

Accession	MIMAT0042160
Description	Astatotilapia burtoni abu-miR-193-5p mature miRNA
Sequence	1 - UGGGUCUUUGCGGGCAAGGUGA - 22
Evidence	experimental Illumina [1]

Mature abu-miR-193-3p

Accession	MIMAT0042161
Description	Astatotilapia burtoni abu-miR-193-3p mature miRNA
Sequence	38 - AACUGGCCUACAAAGUCCCAGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381