miRBase entry: abu-mir-153b

Stem-loop abu-mir-153b


Accession
MI0033877
Description
Astatotilapia burtoni abu-mir-153b precursor miRNA


Sequence

gucauucuugugguuugcagcuaguagucuggguccagUUGCAUAGUCACAAAAAUGAUC
((((((.(((((((((((((((.(..........).))))))).)))))))).)))))).

Structure
-      c        -       a uagu 
 gucauu uugugguu ugcagcu g    c
 |||||| |||||||| ||||||| |     
 UAGUAA AACACUGA ACGUUga c    u
C      A        U       c uggg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425354.1: 516340-516399 [-]

Database links

Mature abu-miR-153b

Accession MIMAT0042162
Description Astatotilapia burtoni abu-miR-153b mature miRNA
Sequence 39 - UUGCAUAGUCACAAAAAUGAUC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381