miRBase entry: abu-mir-23a-1

Stem-loop abu-mir-23a-1

Accession

MI0033887

Description

Astatotilapia burtoni abu-mir-23a-1 precursor miRNA

Sequence

ggaauuccuggcagagugauuuuuuuuaaacuagaggacugaAUCACAUUGCCAGGGAUUUCCA
((((((((((((((.((((((((((((......)))))..))))))).))))))))))))))..

Structure

--              a       --     aa 
  ggaauuccuggcag gugauuu  uuuuu  a
  |||||||||||||| |||||||  |||||   
  CUUUAGGGACCGUU CACUAag  aggag  c
AC              A       uc     au

Annotation confidence Not enough data

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Genome context

JH425895.1: 119336-119399 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-23a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-23a

Accession	MIMAT0042122
Description	Astatotilapia burtoni abu-miR-23a mature miRNA
Sequence	43 - AUCACAUUGCCAGGGAUUUCCA - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381