miRBase entry: abu-mir-301b-2

Stem-loop abu-mir-301b-2


Accession
MI0033888
Description
Astatotilapia burtoni abu-mir-301b-2 precursor miRNA


Sequence

gcuuugacgauguugcacuacuguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure
   u       ---        acu  a   u 
gcu ugacgau   guugcacu   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c 


Annotation confidence Not enough data
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Genome context
JH426012.1: 181937-181996 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-301b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-301b

Accession MIMAT0042111
Description Astatotilapia burtoni abu-miR-301b mature miRNA
Sequence 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381