miRBase entry: abu-mir-429b

Stem-loop abu-mir-429b

Accession

MI0033903

Description

Astatotilapia burtoni abu-mir-429b precursor miRNA

Sequence

gucuuaccagacaugguuagauguaauuauuggugucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((............)))))))..)))))))))).))...

Structure

---  c          ug       guaau 
   gu uuaccagaca  guuagau     u
   || ||||||||||  |||||||      
   CG AAUGGUCUGU  UAAUcug     a
UGC  U          CA       ugguu

Annotation confidence Not enough data

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Genome context

JH425562.1: 813691-813749 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-429b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-429b

Accession	MIMAT0042172
Description	Astatotilapia burtoni abu-miR-429b mature miRNA
Sequence	38 - UAAUACUGUCUGGUAAUGCCGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381