miRBase entry: abu-mir-727a

Stem-loop abu-mir-727a

Accession

MI0033904

Description

Astatotilapia burtoni abu-mir-727a precursor miRNA

Sequence

UCAGUCUUCAAUUCCUCCCAGCccauuacuauggaaacugugaguugaggcgaguugaagacu
..(((((((((((((((.(((.((((....))))...))).))).......))))))))))))

Structure

UC            -------   C   --C    u 
  AGUCUUCAAUUC       CUC CAG   ccau a
  ||||||||||||       ||| |||   ||||  
  ucagaaguugag       gag guc   ggua c
--            cggaguu   u   aaa    u

Annotation confidence Not enough data

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Genome context

JH425974.1: 227836-227898 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-727a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-727a-5p

Accession	MIMAT0042173
Description	Astatotilapia burtoni abu-miR-727a-5p mature miRNA
Sequence	1 - UCAGUCUUCAAUUCCUCCCAGC - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381