miRBase entry: abu-mir-727b

Stem-loop abu-mir-727b

Accession

MI0033905

Description

Astatotilapia burtoni abu-mir-727b precursor miRNA

Sequence

cagucuucaguuccucccagcccauaacuauggcagcaauguGUUGAGGCGAGUUGAAGACUUU
.((((((((((((..((((((.(((..((.....))..))).)))).)).))))))))))))..

Structure

-c            cu  -    c   aa  a 
  agucuucaguuc  cc cagc cau  cu u
  ||||||||||||  || |||| |||  || g
  UCAGAAGUUGAG  GG GUUG gua  ga g
UU            -C  A    u   ac  c

Annotation confidence Not enough data

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Genome context

JH425462.1: 961940-962003 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-727b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-727b-3p

Accession	MIMAT0042174
Description	Astatotilapia burtoni abu-miR-727b-3p mature miRNA
Sequence	43 - GUUGAGGCGAGUUGAAGACUUU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381