miRBase entry: abu-mir-27e-2

Stem-loop abu-mir-27e-2

Accession

MI0033911

Description

Astatotilapia burtoni abu-mir-27e-2 precursor miRNA

Sequence

agaacuuagcucauuagugagcauuacacaaaaaaggaaauugUUCACAGUGGCUAAGUUCAGU
.(((((((((.((((.(((((((.....(......).....))))))))))))))))))))...

Structure

--a         u    a       uuaca aa 
   gaacuuagc cauu gugagca     c  a
   ||||||||| |||| |||||||     |   
   CUUGAAUCG GUGA CACUUgu     g  a
UGA         -    -       uaaag aa

Annotation confidence Not enough data

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Genome context

JH425529.1: 401397-401460 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-27e-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27e

Accession	MIMAT0042099
Description	Astatotilapia burtoni abu-miR-27e mature miRNA
Sequence	44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381