miRBase entry: abu-mir-731

Stem-loop abu-mir-731


Accession
MI0033916
Description
Astatotilapia burtoni abu-mir-731 precursor miRNA


Sequence

AAUGACACGUUUUCUCCCGGAUUGcugugagcaggaaacgcAACCGGGAAUUUCGUGUCAGCC
..(((((((.....((((((.((((.((.........))))))))))))....)))))))...

Structure
-AA       UUUUC      A    u  gag 
   UGACACG     UCCCGG UUGc gu   c
   |||||||     |||||| |||| ||   a
   ACUGUGC     AGGGCC AAcg ca   g
CCG       -UUUA      -    -  aag 


Annotation confidence Not enough data
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Genome context
JH425555.1: 855762-855824 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-731
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-731-5p

Accession MIMAT0042177
Description Astatotilapia burtoni abu-miR-731-5p mature miRNA
Sequence 1 - AAUGACACGUUUUCUCCCGGAUUG - 24
Evidence experimental
Illumina [1]

Mature abu-miR-731-3p

Accession MIMAT0042178
Description Astatotilapia burtoni abu-miR-731-3p mature miRNA
Sequence 42 - AACCGGGAAUUUCGUGUCAGCC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381