miRBase entry: abu-mir-15b

Stem-loop abu-mir-15b

Accession

MI0033918

Description

Astatotilapia burtoni abu-mir-15b precursor miRNA

Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugcgaaccauaauuugcugcuuua
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))...

Structure

--U       C  C        Aa  aa gu 
   AGCAGCG AU AUGGUUUG  ac  u  g
   ||||||| || ||||||||  ||  |   
   ucgucgu ua uaccaagc  ug  a  g
auu       u  a        -g  ga aa

Annotation confidence Not enough data

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Genome context

JH425434.1: 1158454-1158514 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-15b

Accession	MIMAT0042180
Description	Astatotilapia burtoni abu-miR-15b mature miRNA
Sequence	1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381