miRBase entry: abu-mir-23c

Stem-loop abu-mir-23c

Accession

MI0033921

Description

Astatotilapia burtoni abu-mir-23c precursor miRNA

Sequence

ugugucucuggcaagaugauuugggccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(((......))).))))))..)))))))))).)))..

Structure

-u   -          ga      g   ca 
  gug ucucuggcaa  ugauuu ggc  c
  ||| ||||||||||  |||||| |||   
  CAU AGAGACCGUU  ACUAaa uug  a
GU   U          AC      g   aa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH425365.1: 1529853-1529912 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-23c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-23c

Accession	MIMAT0042184
Description	Astatotilapia burtoni abu-miR-23c mature miRNA
Sequence	39 - AUCACAUUGCCAGAGAUUACUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381