miRBase entry: abu-mir-216a

Stem-loop abu-mir-216a

Accession

MI0033930

Description

Astatotilapia burtoni abu-mir-216a precursor miRNA

Sequence

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucucacaauggccucugggauuaug
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   uuaggguc  ccg   acacuc  cg   a
gua        -u   gua      -u  ucg

Annotation confidence Not enough data

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Genome context

JH425327.1: 1191161-1191223 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-216a

Accession	MIMAT0042191
Description	Astatotilapia burtoni abu-miR-216a mature miRNA
Sequence	1 - AAAUCUCAGCUGGCAACUGUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381