miRBase entry: abu-mir-19c

Stem-loop abu-mir-19c


Accession
MI0033935
Description
Astatotilapia burtoni abu-mir-19c precursor miRNA


Sequence

aguuuugaugguuuguucucagcuucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
((((((((((((((((...((((..............)))).))))).)))).)))))))..

Structure
--       -    -     ucu    uucuga 
  aguuuug augg uuugu   cagc      a
  ||||||| |||| |||||   ||||       
  UCGAAAC UACC AAACG   GUcg      a
UC       G    U     --U    ucucag 


Annotation confidence Not enough data
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Genome context
JH425336.1: 3372243-3372304 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-19c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-19c

Accession MIMAT0042196
Description Astatotilapia burtoni abu-miR-19c mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381