miRBase entry: abu-mir-2187b

Stem-loop abu-mir-2187b


Accession
MI0033938
Description
Astatotilapia burtoni abu-mir-2187b precursor miRNA


Sequence

UUUAAUUAGUACAGCCUGUAUUaguaaugucaucuauucuUUACAGGCUAUGCUAAUCUAUGc
....(((((((.((((((((..((.((((.....)))))).)))))))).)))))))......

Structure
--UUUA       C        UU  u    u 
      AUUAGUA AGCCUGUA  ag aaug c
      ||||||| ||||||||  || |||| a
      UAAUCGU UCGGACAU  uc uuau u
cGUAUC       A        -U  -    c 


Annotation confidence Not enough data
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Genome context
JH425695.1: 533936-533998 [+]

Database links

Mature abu-miR-2187b-5p

Accession MIMAT0042200
Description Astatotilapia burtoni abu-miR-2187b-5p mature miRNA
Sequence 1 - UUUAAUUAGUACAGCCUGUAUU - 22
Evidence experimental
Illumina [1]

Mature abu-miR-2187b-3p

Accession MIMAT0042201
Description Astatotilapia burtoni abu-miR-2187b-3p mature miRNA
Sequence 41 - UUACAGGCUAUGCUAAUCUAUG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381