miRBase entry: abu-mir-147

Stem-loop abu-mir-147


Accession
MI0033941
Description
Astatotilapia burtoni abu-mir-147 precursor miRNA


Sequence

acagaaucguuucugcacaaacuaggacgcuuugacacucaGUGUGCGGAAAUGCUUCUGCUC
.(((((.((((((((((((....((............))...)))))))))))).)))))...

Structure
--a     u            aacu  gacgc 
   cagaa cguuucugcaca    ag     u
   ||||| ||||||||||||    ||      
   GUCUU GUAAAGGCGUGU    uc     u
CUC     C            -Gac  acagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425582.1: 502132-502194 [+]

Database links

Mature abu-miR-147

Accession MIMAT0042204
Description Astatotilapia burtoni abu-miR-147 mature miRNA
Sequence 42 - GUGUGCGGAAAUGCUUCUGCUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381