miRBase entry: abu-mir-18b

Stem-loop abu-mir-18b


Accession
MI0033944
Description
Astatotilapia burtoni abu-mir-18b precursor miRNA


Sequence

UAAGGUGCAUCUAGUGUAGUUAgugaaguauucaaagucuacugcccuaguugccccuucug
.((((.(((.((((.(((((...((((...))))......))))).)))).))).))))...

Structure
--U    U   U    U     ---UAg    g 
   AAGG GCA CUAG GUAGU      ugaa  
   |||| ||| |||| |||||      |||| u
   uucc cgu gauc cguca      acuu  
guc    c   u    c     ucugaa    a 


Annotation confidence Not enough data
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Genome context
JH425336.1: 3371110-3371171 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-18b

Accession MIMAT0042207
Description Astatotilapia burtoni abu-miR-18b mature miRNA
Sequence 1 - UAAGGUGCAUCUAGUGUAGUUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381