miRBase entry: abu-mir-212-1

Stem-loop abu-mir-212-1


Accession
MI0033950
Description
Astatotilapia burtoni abu-mir-212-1 precursor miRNA


Sequence

accuuggcuuuagacugcuuacugcuuauacaguaucaaaguacaGUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure
-a  u     u       c      cuua   agu 
  cc uggcu uagacug uuacug    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUGac    aug   c
UC  U     C       -      ----   aaa 


Annotation confidence Not enough data
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Genome context
JH425830.1: 307903-307969 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-212-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-212-3p

Accession MIMAT0042213
Description Astatotilapia burtoni abu-miR-212-3p mature miRNA
Sequence 46 - GUAACAGUCUACAGUCAUGGCU - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381