miRBase entry: abu-mir-449b

Stem-loop abu-mir-449b


Accession
MI0033960
Description
Astatotilapia burtoni abu-mir-449b precursor miRNA


Sequence

UGGCAGUGUAAUGUUAGCUGACguuucuucagcCAGCUCACACUGCUCUGCUACU
((((((.(((.(((.(((((.(.........).))))).))).))).))))))..

Structure
--      U   A   U     A guu 
  UGGCAG GUA UGU AGCUG C   u
  |||||| ||| ||| ||||| |   c
  AUCGUC CGU ACA UCGAC g   u
UC      U   C   C     c acu 


Annotation confidence Not enough data
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Genome context
JH425386.1: 1394859-1394913 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-449b-5p

Accession MIMAT0042224
Description Astatotilapia burtoni abu-miR-449b-5p mature miRNA
Sequence 1 - UGGCAGUGUAAUGUUAGCUGAC - 22
Evidence experimental
Illumina [1]

Mature abu-miR-449b-3p

Accession MIMAT0042225
Description Astatotilapia burtoni abu-miR-449b-3p mature miRNA
Sequence 34 - CAGCUCACACUGCUCUGCUACU - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381