miRBase entry: abu-mir-449a

Stem-loop abu-mir-449a


Accession
MI0033961
Description
Astatotilapia burtoni abu-mir-449a precursor miRNA


Sequence

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugugccagcucaccugcugcugcccuc
.(((((((.(..((.((((((((...........)))))))).))..).)))))))...

Structure
--A       U UU  U        guuu 
   GGCAGUG C  GU AGCUGGUa    c
   ||||||| |  || ||||||||    u
   ccgucgu g  ca ucgaccgu    u
cuc       c uc  c        gucc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH425386.1: 1394656-1394714 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-449a

Accession MIMAT0042226
Description Astatotilapia burtoni abu-miR-449a mature miRNA
Sequence 1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381