miRBase entry: abu-mir-3120

Stem-loop abu-mir-3120


Accession
MI0033965
Description
Astatotilapia burtoni abu-mir-3120 precursor miRNA


Sequence

cugucugugccugcuguacagguuggaggauauucUGCACAGCAAGUGUAGAUAGGC
((((((((((.((((((.((((.((.....)).)))).)))))).))))))))))..

Structure
--          c      a    u  g 
  cugucugugc ugcugu cagg ug a
  |||||||||| |||||| |||| || g
  GAUAGAUGUG ACGACA GUcu au g
CG          A      C    u  a 


Annotation confidence Not enough data
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Genome context
JH425511.1: 201546-201602 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from abu-mir-3120
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-3120

Accession MIMAT0042230
Description Astatotilapia burtoni abu-miR-3120 mature miRNA
Sequence 36 - UGCACAGCAAGUGUAGAUAGGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381