miRBase entry: abu-mir-10546-2

Stem-loop abu-mir-10546-2


Accession
MI0033970
Description
Astatotilapia burtoni abu-mir-10546-2 precursor miRNA


Sequence

CAGGGUUGGUACUGAUGGACCaggggcucuacugguccaucaguaccaacccuguc
(((((((((((((((((((((((........)))))))))))))))))))))))..

Structure
--                       ggg 
  CAGGGUUGGUACUGAUGGACCag   c
  |||||||||||||||||||||||    
  gucccaaccaugacuaccugguc   u
cu                       auc 


Annotation confidence Not enough data
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Genome context
JH425483.1: 843714-843769 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-10546-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-10546

Accession MIMAT0042235
Description Astatotilapia burtoni abu-miR-10546 mature miRNA
Sequence 1 - CAGGGUUGGUACUGAUGGACC - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381