miRBase entry: abu-mir-10548

Stem-loop abu-mir-10548


Accession
MI0033973
Description
Astatotilapia burtoni abu-mir-10548 precursor miRNA


Sequence

CGUGGCCUGCGGUGCCGUGCaggugcguccgccuccucugCACGGCACCGCAGGCCCCGCCc
((.((((((((((((((((((((.((....))...).))))))))))))))))))).))...

Structure
---  U                   - --u  g 
   CG GGCCUGCGGUGCCGUGCag g   gc u
   || ||||||||||||||||||| |   ||  
   GC CCGGACGCCACGGCACguc c   cg c
cCC  C                   u cuc  c 


Annotation confidence Not enough data
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Genome context
JH425794.1: 410640-410701 [+]

Database links

Mature abu-miR-10548-5p

Accession MIMAT0042238
Description Astatotilapia burtoni abu-miR-10548-5p mature miRNA
Sequence 1 - CGUGGCCUGCGGUGCCGUGC - 20
Evidence experimental
Illumina [1]

Mature abu-miR-10548-3p

Accession MIMAT0042239
Description Astatotilapia burtoni abu-miR-10548-3p mature miRNA
Sequence 41 - CACGGCACCGCAGGCCCCGCC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381