Stem-loop abu-mir-10551

Accession

MI0033977

Description

Astatotilapia burtoni abu-mir-10551 precursor miRNA

Sequence

AGGAAAUCUGCUUCUGUUGGUUUgguauuacuaaaacaucacaggagcagaguuuuucc
.((((((((((((((((((..(((((...)))))..))..)))))))))))...)))))

Structure

A     ---           --  GU     a 
 GGAAA   UCUGCUUCUGU  UG  UUggu  
 |||||   |||||||||||  ||  ||||| u
 ccuuu   agacgaggaca  ac  aauca  
-     uug           cu  aa     u 

Annotation confidence Not enough data

Genome context

JH425323.1: 1542420-1542478 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from abu-mir-10551

Mature abu-miR-10551

• Accession: MIMAT0042244
• Description: Astatotilapia burtoni abu-miR-10551 mature miRNA
• Sequence: 1 - AGGAAAUCUGCUUCUGUUGGUUU - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381