miRBase entry: abu-mir-29d

Stem-loop abu-mir-29d


Accession
MI0033982
Description
Astatotilapia burtoni abu-mir-29d precursor miRNA


Sequence

acugguuucagauggugucuuagaguacaaaauaccaucUAGCACCAUUUGAAAUCGGUGUU
((((((((((((((((((..(((((((.....)))..))))))))))))))))))))))...

Structure
---                  cu    --   c 
   acugguuucagauggugu  uaga  gua a
   ||||||||||||||||||  ||||  ||| a
   UGGCUAAAGUUUACCACG  AUcu  cau a
UUG                  --    ac   a 


Annotation confidence Not enough data
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Genome context
JH425342.1: 2343223-2343284 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from abu-mir-29d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature abu-miR-29d

Accession MIMAT0042249
Description Astatotilapia burtoni abu-miR-29d mature miRNA
Sequence 40 - UAGCACCAUUUGAAAUCGGUGUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381