miRBase entry: abu-mir-145

Stem-loop abu-mir-145

Accession

MI0033986

Description

Astatotilapia burtoni abu-mir-145 precursor miRNA

Sequence

GUCCAGUUUUCCCAGGAAUCCCuugaccuaucagaaagggggauuccuggaaauacuguucuu
...((((.((.(((((((((((((...((...))...))))))))))))).)).)))).....

Structure

--GUC    U  C             gac  a 
     CAGU UU CCAGGAAUCCCuu   cu  
     |||| || |||||||||||||   || u
     guca aa gguccuuaggggg   ga  
uucuu    u  a             aaa  c

Annotation confidence Not enough data

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Genome context

JH425754.1: 192965-193027 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-145

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-145

Accession	MIMAT0042252
Description	Astatotilapia burtoni abu-miR-145 mature miRNA
Sequence	1 - GUCCAGUUUUCCCAGGAAUCCC - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381