miRBase entry: abu-mir-27c

Stem-loop abu-mir-27c

Accession

MI0033989

Description

Astatotilapia burtoni abu-mir-27c precursor miRNA

Sequence

caggacuuaacccacaugugaacagugagugucugccaugUUCACAGUGGUUAAGUUCUGCC
((((((((((((.((.((((((((.((.((....))))))))))))))))))))))))))..

Structure

--            c  a        g  a  g 
  caggacuuaacc ac ugugaaca ug gu u
  |||||||||||| || |||||||| || ||  
  GUCUUGAAUUGG UG ACACUUgu ac cg c
CC            -  -        -  -  u

Annotation confidence Not enough data

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Genome context

JH425895.1: 119545-119606 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from abu-mir-27c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-27c

Accession	MIMAT0042255
Description	Astatotilapia burtoni abu-miR-27c mature miRNA
Sequence	41 - UUCACAGUGGUUAAGUUCUGCC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381