miRBase entry: abu-mir-10555

Stem-loop abu-mir-10555

Accession

MI0033997

Description

Astatotilapia burtoni abu-mir-10555 precursor miRNA

Sequence

ccucaagcugcuguugcucgucuguggcgauccaGAAAUAGCAGCAGCUUGUCUGG
((.(((((((((((((....((((........))))..)))))))))))))...))

Structure

  --u             cucg    ugg 
cc   caagcugcuguug    ucug   c
||   |||||||||||||    ||||    
GG   GUUCGACGACGAU    AGac   g
  UCU             --AA    cua

Annotation confidence Not enough data

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Genome context

JH425555.1: 918653-918708 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from abu-mir-10555

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature abu-miR-10555

Accession	MIMAT0042262
Description	Astatotilapia burtoni abu-miR-10555 mature miRNA
Sequence	35 - GAAAUAGCAGCAGCUUGUCUGG - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381