miRBase entry: mze-mir-183-2

Stem-loop mze-mir-183-2


Accession
MI0034014
Description
Metriaclima zebra mze-mir-183-2 precursor miRNA


Sequence

UAUGGCACUGGUAGAAUUCACUGugagagcucacuaucagugaauuaccauagggccauaaa
((((((..(((((..((((((((..((......))..)))))))))))))....))))))..

Structure
--      --AC     GA        ug  ag 
  UAUGGC    UGGUA  AUUCACUG  ag  c
  ||||||    |||||  ||||||||  ||   
  auaccg    accau  uaagugac  uc  u
aa      ggau     --        ua  ac 


Annotation confidence Not enough data
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Genome context
AGTA03000163.1: 2032208-2032269 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-183-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-183

Accession MIMAT0042279
Description Metriaclima zebra mze-miR-183 mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381