miRBase entry: mze-mir-182

Stem-loop mze-mir-182


Accession
MI0034016
Description
Metriaclima zebra mze-mir-182 precursor miRNA


Sequence

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggugguucuagacuugccaacu
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure
-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  aaccguu   aucuug   guggcc      g
uc       cag      ---      uaggua 


Annotation confidence Not enough data
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Genome context
AGTA03000163.1: 2031479-2031542 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-182

Accession MIMAT0042280
Description Metriaclima zebra mze-miR-182 mature miRNA
Sequence 1 - UUUGGCAAUGGUAGAACUCACA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381