miRBase entry: mze-mir-133a-1

Stem-loop mze-mir-133a-1

Accession

MI0034057

Description

Metriaclima zebra mze-mir-133a-1 precursor miRNA

Sequence

agcugguaaaauggaaccaaaucaccucuugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure

--       aa  u  a        accuc 
  agcuggu  aa gg accaaauc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag

Annotation confidence Not enough data

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Genome context

AGTA03000035.1: 8758016-8758075 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-133a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-133a

Accession	MIMAT0042298
Description	Metriaclima zebra mze-miR-133a mature miRNA
Sequence	39 - UUGGUCCCCUUCAACCAGCUGU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381