miRBase entry: mze-mir-25

Stem-loop mze-mir-25

Accession

MI0034059

Description

Metriaclima zebra mze-mir-25 precursor miRNA

Sequence

aggcggagacuugggcaauugccgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    g     uu g     u   ----   c 
  aggc gagac  g gcaau gcc    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u

Annotation confidence Not enough data

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Genome context

AGTA03000037.1: 128882-128941 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mze-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-25

Accession	MIMAT0042300
Description	Metriaclima zebra mze-miR-25 mature miRNA
Sequence	39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381