miRBase entry: mze-mir-30c

Stem-loop mze-mir-30c


Accession
MI0034066
Description
Metriaclima zebra mze-mir-30c precursor miRNA


Sequence

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggccgggagugggacuguuugcacu
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure
--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  acguuugu agg  gugagggccg ugg   c
uc        c   --          g   ucu 


Annotation confidence Not enough data
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Genome context
AGTA03000055.1: 1813641-1813702 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-30c

Accession MIMAT0042306
Description Metriaclima zebra mze-miR-30c mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCUCGGC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381