miRBase entry: mze-mir-222-1

Stem-loop mze-mir-222-1

Accession

MI0034067

Description

Metriaclima zebra mze-mir-222-1 precursor miRNA

Sequence

ugcucaguagucaguguagauccuguggggcuggcagcAGCUACAUCUGGCUACUGGGUCUC
.((((((((((((((((((...((((.......))))...))))).)))))))))))))...

Structure

--u             -     auc    gg 
   gcucaguagucag uguag   cugu  g
   ||||||||||||| |||||   ||||  g
   UGGGUCAUCGGUC ACAUC   gacg  c
CUC             U     GAc    gu

Annotation confidence Not enough data

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Genome context

AGTA03000041.1: 1144947-1145008 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-222-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-222

Accession	MIMAT0042307
Description	Metriaclima zebra mze-miR-222 mature miRNA
Sequence	39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381