miRBase entry: mze-mir-221-1

Stem-loop mze-mir-221-1

Accession

MI0034081

Description

Metriaclima zebra mze-mir-221-1 precursor miRNA

Sequence

accuggcauacaauguagauuucugugugguucaauucuacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....(((((.((......)))))))))))))))).))))))))...

Structure

---        u         auuu     u  uu 
   accuggca acaauguag    cugug gg  c
   |||||||| |||||||||    ||||| ||   
   UGGGUCGU UGUUACAUC    GAcau cu  a
CUU        C         ----     -  ua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AGTA03000213.1: 206082-206145 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-221-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-221

Accession	MIMAT0042316
Description	Metriaclima zebra mze-miR-221 mature miRNA
Sequence	42 - AGCUACAUUGUCUGCUGGGUUUC - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381