miRBase entry: mze-let-7e-1

Stem-loop mze-let-7e-1


Accession
MI0034084
Description
Metriaclima zebra mze-let-7e-1 precursor miRNA


Sequence

UGAGGUAGUAGAUUGAAUAGUUgugggguuuacauccuccuuuugagauaacuauacaaucuacugucuuucc
.((((((((((((((.((((((((((((........)))).......)))))))).))))))))))))))...

Structure
--U              A        -------    uuu 
   GAGGUAGUAGAUUG AUAGUUgu       gggg   a
   |||||||||||||| ||||||||       ||||    
   uucugucaucuaac uaucaaua       ccuc   c
ccu              a        gaguuuu    cua 


Annotation confidence Not enough data
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Genome context
AGTA03000042.1: 3884463-3884535 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-let-7e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-let-7e

Accession MIMAT0042319
Description Metriaclima zebra mze-let-7e mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381