miRBase entry: mze-mir-214-1

Stem-loop mze-mir-214-1


Accession
MI0034087
Description
Metriaclima zebra mze-mir-214-1 precursor miRNA


Sequence

ugccugucuacacuugcugugcagaccuucugcuccuguACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure
--         aca            accu 
  ugccugucu   cuugcugugcag    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    u
AG         CAC            cucg 


Annotation confidence Not enough data
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Genome context
AGTA03000118.1: 3413742-3413802 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-214-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-214

Accession MIMAT0042320
Description Metriaclima zebra mze-miR-214 mature miRNA
Sequence 40 - ACAGCAGGCACAGACAGGCAGA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381