miRBase entry: mze-mir-216b

Stem-loop mze-mir-216b


Accession
MI0034088
Description
Metriaclima zebra mze-mir-216b precursor miRNA


Sequence

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucacaaucaccuggagagauucug
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure
--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   uuagaga gucc    acacu cu    u
guc       g    acua     -  uuua 


Annotation confidence Not enough data
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Genome context
AGTA03000178.1: 2819625-2819685 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-216b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-216b

Accession MIMAT0042321
Description Metriaclima zebra mze-miR-216b mature miRNA
Sequence 1 - UAAUCUCUGCAGGCAACUGUGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381