miRBase entry: mze-mir-301b-1

Stem-loop mze-mir-301b-1


Accession
MI0034092
Description
Metriaclima zebra mze-mir-301b-1 precursor miRNA


Sequence

cuuugacaauguugcacuacuguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGC
((.(((((((((((((((.(((............))).))))))))...))))))).)).

Structure
-  u       ---        a   uacca 
 cu ugacaau   guugcacu cug     u
 || |||||||   |||||||| |||      
 GA ACUGUUA   UAACGUGA gau     c
C  U       UGA        C   cuuac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000002.1: 7169839-7169898 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-301b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-301b

Accession MIMAT0042324
Description Metriaclima zebra mze-miR-301b mature miRNA
Sequence 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381